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Stella protects the oocyte methyloma by preventing DNMT1-induced de novo methylation

  • 1.

    Shirane, K. et al. Mouse oocyte methylomas at baseline resolution reveal accumulation in the genome of non-CpG methylation and the role of DNA methyltransferase. PLoS Genet. 9, e1003439 (2013).

  • 2

    Smallwood, S.A. et al. Dynamic methylation landscape of CpG islands in oocytes and preimplantation embryos. Nat. Broom. 43811-814 (2011).

  • 3

    Stewart, K.R., Veselovska, L. & Kelsey, G. Establishment and functions of DNA methylation in the germ line. epigenomics 81399-1413 (2016).

  • 4

    Kobayashi, H. et al. Contribution of methylation of intragenic DNA in methylomes of mouse gametic DNA to establish specific heritable markings of oocytes. PLoS Genet. 8e1002440 (2012).

  • 5

    Nakamura, T. et al. PGC7 / Stella protects against the demethylation of DNA at the beginning of embryogenesis. Nat. Biol cell. 9, 64-71 (2007).

  • 6

    Bortvin, A., Goodheart, M., Liao, M. & Page, D.C. Dppa3 / Pgc7 / stella is a maternal factor and is not required for the specification of germ cells in mice. BMC Dev. Biol. 4, 2 (2004).

  • 7.

    Pay, B. et al. Stella is a maternal-effect gene necessary for normal early development in mice. Curr. Biol. 132110-2117 (2003).

  • 8

    Sharif, J. et al. SRA Np95 protein is involved in epigenetic transmission by recruiting Dnmt1 in methylated DNA. Nature 450908-912 (2007).

  • 9

    Bostick, M. et al. UHRF1 plays a role in maintaining the methylation of DNA in mammalian cells. Science 317, 1760-1764 (2007).

  • ten.

    Sato, M. et al. Identification of PGC7, a new gene expressed specifically in embryos and preimplantation germ cells. Mech. dev. 11391-94 (2002).

  • 11

    Saitou, M., Barton, S.C. and Surani, M.A. A molecular program for the specification of germ cell fate in mice. Nature 418293-300 (2002).

  • 12

    Funaki, S. et al. Inhibition of methylation of maintenance DNA by Stella. Biochem. Biophys. Res. Common. 453455-460 (2014).

  • 13

    Maenohara, S. et al. Role of UHRF1 in the de novo methylation of DNA in oocytes and maintenance methylation in preimplantation embryos. PLoS Genet. 13, e1007042 (2017).

  • 14

    Huang, Y. et al. Stella modulates the transcriptional and endogenous retrovirus programs during the transition from mother to zygose. eLife 6, e22345 (2017).

  • 15

    Shin, S.W., Vogt, E., Jimenez-Movilla, M., Baibakov, B. and Dean, J. Cytoplasmic cleavage of DPPA3 is required for intracellular trafficking and development at the cleavage stage in mice. Nat. Common. 81643 (2017).

  • 16

    Bourc'his, D., Xu, G.L., Lin, C.S., Bollman, B. & Bestor, T.H. Dnmt3L and the establishment of maternal genomic fingerprints. Science 2942536-2539 (2001).

  • 17

    Kaneda, M. et al. Essential role of DNA de novo methyltransferase Dnmt3a in the paternal and maternal impression. Nature 429900-903 (2004).

  • 18

    Nakamura, T. et al. PGC7 binds the H3K9me2 histone to protect against conversion of 5 mC to 5 hCm in early embryos. Nature 486415-419 (2012).

  • 19

    Han, L. et al. Embryonic defects induced by maternal obesity in mice stem from Stella deficiency in oocytes. Nat. Broom. 50432-442 (2018).

  • 20

    Li, Y. and O. Neill, C. 5'-Methylcytosine and 5'-hydroxymethylcytosine each provide epigenetic information to the mouse zygote. PLoS ONE 8, e63689 (2013).

  • 21

    Bestor, T.H. and Ingram, V.M. Two DNA methyltransferases of murine erythroleukemia cells: purification, sequence specificity and mode of interaction with DNA. Proc. Natl Acad. Sci. United States 805559-5563 (1983).

  • 22

    Goto, K. et al. Expression of the DNA methyltransferase gene in mature and immature neurons as well as in proliferating cells in mice. Differentiation 5639-44 (1994).

  • 23

    Arand, J. et al. In vivo control of DNA methylation by DNA methyltransferases of CpG and non-CpG DNAs. PLoS Genet 8, e1002750 (2012).

  • 24

    Lorincz, M., C., Schübeler, D., Hutchinson, SR, Dickerson, DR and Groudine, M. The DNA methylation density influences the stability of an epigenetic imprint and de novo methylation independent of Dnmt3a / b. Mol. Cell. Biol. 227572 to 7580 (2002).

  • 25

    Vertino, P.M., Yen, R.W., Gao, J. & Baylin, S. B. De novo methylation of CpG island sequences in human fibroblasts overexpressing DNA (cytosine-5 -) methyltransferase. Mol. Cell. Biol. 164555-4565 (1996).

  • 26

    Takagi, H., Tajima, S. and Asano, A. The overexpression of DNA methyltransferase in myoblast cells accelerates the formation of myotubes. EUR. J. Biochem. 231282-291 (1995).

  • 27

    Tiscornia, G., Singer, O. & Verma, I. M. Production and purification of lentiviral vectors. Nat. Protocol. 1, 241-245 (2006).

  • 28

    de Vries, W.N. et al. Expression of Cre recombinase in mouse oocytes: a way to study maternal-effect genes. Genesis 26110-112 (2000).

  • 29

    Jackson-Grusby, L. et al. The loss of genomic methylation results in p53-dependent apoptosis and epigenetic dysregulation. Nat. Broom. 2731-39 (2001).

  • 30

    Gu, T.P. et al. The role of Tetox dioxygenase DNA in epigenetic reprogramming by oocytes. Nature 477, 606-610 (2011).

  • 31.

    Rothbauer, U. et al. A versatile nanotrap for biochemical and functional studies with fluorescent fusion proteins. Mol. Cellular proteomics 7, 282-289 (2008).

  • 32

    Qin, W. et al. Effective editing of the CRISPR / Cas9 mediated genome in mice by zygote nuclease electroporation. Genetic 200423-430 (2015).

  • 33

    Hashimoto, M. & Takemoto, T. Electroporation allows efficient distribution of mRNA in mouse zygotes and facilitates CRISPR / Cas9 based genome editing. Sci. Representative. 511315 (2015).

  • 34

    Bock, C. et al. BiQ analyzer: visualization and quality control of DNA methylation data from bisulfite sequencing. bioinformatics 214067 to 4068 (2005).

  • 35

    Yin, R. et al. Ascorbic acid improves the oxidation of 5-methylcytosine mediated by TET and promotes the demethylation of DNA in mammals. Jam. Chem. Soc. 13510396-10403 (2013).

  • 36

    Boyle, P. et al. Sequencing of gel-free multiplexed reduced-representation bisulfite for large-scale profiling of DNA methylation. Genome Biol. 13R92 (2012).

  • 37

    Gu, H. et al. Preparation of reduced representation bisulfite sequencing libraries for the establishment of genome-wide DNA methylation profiles. Nat. protoc. 6468-481 (2011).

  • 38

    Shen, L. et al. Tet3 and DNA replication induce demethylation of maternal and paternal genomes in mouse zygotes. Cell strain cell 15459-471 (2014).

  • 39

    Krueger, F. and Andrews, S. R. Bismark: Calling for Alignment and Methylation for Bisulfite-Seq Applications bioinformatics 271571-1572 (2011).

  • 40

    Illingworth, R.S. et al. The orphan CpG islands identify many promoters conserved in the mammalian genome. PLoS Genet. 6e1001134 (2010).

  • 41

    Krueger, F. and Andrews, S. R. SNPsplit: Division of allele-specific alignments between genomes with known SNP genotypes. F1000Res. 51479 (2016).

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